Previous studies have integrated genome‐wide association studies with expression quantitative trait locus (eQTL) data from bulk tissues to identify stroke susceptibility genes. However, eQTL data ...
Transposable elements (TEs) are crucial for genetic diversity and gene regulation. Current single-cell quantification methods often align multi-mapping reads to either ‘best-mapped’ or ‘random-mapped’ ...
Ongoing work in functional annotations of genomes has generated rich datasets. We propose a method to link extensive functional annotations to genotype-to-phenotype associations. This method ranks ...
Copyright: © 2023 The Author(s). Published by Elsevier B.V. Two new AD/dementia GWAS have dramatically expanded the sample sizes and the number of disease ...
GAHP is a freely available software package for genetic analysis with bi-parental immortalized heterozygous and pure-line populations. The package is project-based and integrated with multiple ...
Genetic differences between individuals underlie susceptibility to many diseases. Genome-wide association studies (GWAS) have discovered many susceptibility genes but were often limited to cohorts of ...
The core of the software - alibaseq.py - is designed to retrieve homologous regions from a FASTA file with contigs (e.g., an NGS read assembly file). The retrieval is done based on reading BLAST, ...
This method for directly enriching the 5´ end of primary transcripts enables the determination of transcription start sites at single-base resolution. Coupled with long read sequencing, the method ...
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