The goal of the course is to improve programming and problem-solving skills of the students by facing them with difficult problems and by presenting the techniques that help their reasoning in the ...

Edit distance—a classical problem in computer science—has received ongoing attention from both practitioners and theoreticians. Given two strings A and B, the edit distance is the minimum number of ...

Bacteriophages are gaining increasing interest as antimicrobial tools, largely due to the emergence of multi-antibiotic–resistant bacteria. Although their huge diversity and virulence make them ...

The cost of maintaining exabytes of data produced by sequencing experiments every year has become a major issue in today’s genomic research. In spite of the increasing popularity of third-generation ...

In this paper, a novel image encryption algorithm based on the Once Forward Long Short Term Memory Structure (OF-LSTMS) and the Two-Dimensional Coupled Map Lattice (2DCML) fractional-order chaotic ...

With the generation of a large amount of sequencing data, different assemblers have emerged to perform de novo genome assembly. As a single strategy is hard to fit various biases of datasets, none of ...

Note: Some of the code here is old and was written when I was learning C++. It might be possible that code is not safe or making wrong assumptions. Please use with caution. Pull requests are always ...

When the long reads generated using single-molecule se-quencing (SMS) technology were made available, most researchers were skeptical about the ability of existing algorithms to generate high-quality ...

Ultraconserved elements (UCEs) are DNA sequences that are 100% identical (no base substitutions, insertions, or deletions) and located in syntenic positions in at least two genomes. Although hundreds ...